Glyma07g10030 - SoyBase

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Report for Sequence Feature Glyma07g10030

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8420868
stop:	8422597
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g10030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_Q42447	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Maturation protein n=1 Tax=Glycine max RepID=Q42447_SOYBN	SoyBase	E_val: 3.00E-164	ISS
UniRef100_Q42447	UniRef	Annotation by Michelle Graham. Best UniRef hit: Maturation protein n=1 Tax=Glycine max RepID=Q42447_SOYBN	SoyBase	E_val: 3.00E-164	ISS

Expression Patterns of Glyma07g10030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g10030

Paralog	Evidence	Comments
Glyma09g31740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g10030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g090400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g10030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g10030

Limit To All Plant Sequences

>Glyma07g10030.1   sequence type=CDS   gene model=Glyma07g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTTATCAGAAGCACTACGATGATCAGGGTCGCAAGGTCGACGAGTATGGCAATGTTGAGAGGCAAACTGACGAATATGGCAACCCGGTTCATGCCACTAGTGTCACTTATGTAGCCACTAAAAGTGTTGGTGGCTACAATGATGACACTAATAAGCAACATGATACCACCGGTGTCTATCCTGAGAAAGATACCGGTAGGCATCATTTTGGTCGTGGTTACGATGGTGACACTAATAAGCAACAACATGATGCTATTGGTGTTTATCCCGGAATAGACATTGGTAGAGATCATGAGACTACCGGTGTTTATGGCCTAAACACCGATAGACATCATGGAACGACTGGTGTCAATCCCGGAATAGACACCCATAACCAACAACATGGGACTACCGGTGGTTATGCTGGTGACACTGGAAGGCAGCATGGGAATACAGGTGGCCTTTACTATGGAACCGACACCGCGGACACAGGAACCGGTCCTAGAAGTGGAAACACCGGTGGCACCGGTTATGGAGGCACTGGTGGTACTGATTATGGAACAGCTGGTGGCACTGGTTATGGAAGTGGAACTGGCTATGGAATCAACACTGGGGGTGCGCACACTGAAGCAGGGTATGGGAAGGAGCATCGTCAGCATGAGCAATCTCATGGTGGTCAGCACGAGAAGAAAGGGATACTGGACAAGATTAAGGAGAAGCTTCCTGGAGGACACAGTGACAAGTAG

Predicted protein sequences of Glyma07g10030

Limit To All Plant Sequences

>Glyma07g10030.1   sequence type=predicted peptide   gene model=Glyma07g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASYQKHYDDQGRKVDEYGNVERQTDEYGNPVHATSVTYVATKSVGGYNDDTNKQHDTTGVYPEKDTGRHHFGRGYDGDTNKQQHDAIGVYPGIDIGRDHETTGVYGLNTDRHHGTTGVNPGIDTHNQQHGTTGGYAGDTGRQHGNTGGLYYGTDTADTGTGPRSGNTGGTGYGGTGGTDYGTAGGTGYGSGTGYGINTGGAHTEAGYGKEHRQHEQSHGGQHEKKGILDKIKEKLPGGHSDK*

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